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I was able to solve this problem. For any future reference, I encoded the content of the file using base64 command and then stored base64 encoded content as build secret. Then, from the build script I was able to access the secret and recreate the binary file by decoding base64 to the binary form.
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For Android build we need a keystore binary file to supply to the build script. This file cannot be part of the code repository because it is like an ssh private key. As it is a binary file we cannot simply keep content of the file as build secret. What would be the best way to supply binary file like this to the build script?